1" Vim syntax file 2" Language: AceDB model files 3" Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk) 4" Last change: Thu Apr 26 10:38:01 BST 2001 5" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim 6 7" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm 8" AceDB software is available from http://www.acedb.org 9 10" For version 5.x: Clear all syntax items 11" For version 6.x: Quit when a syntax file was already loaded 12if version < 600 13 syntax clear 14elseif exists("b:current_syntax") 15 finish 16endif 17 18syn keyword acedbXref XREF 19syn keyword acedbModifier UNIQUE REPEAT 20 21syn case ignore 22syn keyword acedbModifier Constraints 23syn keyword acedbType DateType Int Text Float 24 25" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html 26syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title 27syn keyword acedbMagic Flipped Centre Extent View Default_view 28syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes 29syn keyword acedbMagic Mapping_data More_data Position Ends Left Right 30syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative 31syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge 32syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag 33syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit 34syn keyword acedbMagic Locator Magnification Projection_lines_on 35syn keyword acedbMagic Marker_points Marker_intervals Contigs 36syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood 37syn keyword acedbMagic Point_query Point_yellow Point_width 38syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne 39syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates 40syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all 41syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap 42syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid 43syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling 44syn keyword acedbMagic DNA Structure From Source Source_Exons 45syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele 46syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive 47syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol 48syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title 49syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant 50syn keyword acedbMagic Tested Selected_trans Backcross Back_one 51syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc 52syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B 53syn keyword acedbMagic Score Score_by_offset Score_by_width 54syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X 55syn keyword acedbMagic Journal Year Volume Page Author 56syn keyword acedbMagic Selected One_all Recs_all One_let 57syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected 58syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid 59syn keyword acedbMagic Reversed_physical Points Positive Negative 60syn keyword acedbMagic Point_error_scale Point_segregate_ordered 61syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD 62syn keyword acedbMagic EMBL_feature Homol Feature 63syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width 64syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query 65syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to 66syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A 67syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence 68syn keyword acedbMagic Visible Properties Transposon 69 70syn match acedbClass "^?\w\+\|^#\w\+" 71syn match acedbComment "//.*" 72syn region acedbComment start="/\*" end="\*/" 73syn match acedbComment "^#\W.*" 74syn match acedbHelp "^\*\*\w\+$" 75syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" 76syn match acedbBlock "//#.\+#$" 77syn match acedbOption "^_[DVH]\S\+" 78syn match acedbFlag "\s\+-\h\+" 79syn match acedbSubclass "^Class" 80syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" 81syn match acedbNumber "\<\d\+\>" 82syn match acedbNumber "\<\d\+\.\d\+\>" 83syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" 84syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline 85 86" Rest of syntax highlighting rules start here 87 88" Define the default highlighting. 89" For version 5.7 and earlier: only when not done already 90" For version 5.8 and later: only when an item doesn't have highlighting yet 91if version >= 508 || !exists("did_acedb_syn_inits") 92 if version < 508 93 let did_acedb_syn_inits = 1 94 command -nargs=+ HiLink hi link <args> 95 else 96 command -nargs=+ HiLink hi def link <args> 97 endif 98 99 HiLink acedbMagic Special 100 HiLink acedbHyb Special 101 HiLink acedbType Type 102 HiLink acedbOption Type 103 HiLink acedbSubclass Type 104 HiLink acedbSubtag Include 105 HiLink acedbFlag Include 106 HiLink acedbTag Include 107 HiLink acedbClass Todo 108 HiLink acedbHelp Todo 109 HiLink acedbXref Identifier 110 HiLink acedbModifier Label 111 HiLink acedbComment Comment 112 HiLink acedbBlock ModeMsg 113 HiLink acedbNumber Number 114 HiLink acedbString String 115 116 delcommand HiLink 117endif 118 119let b:current_syntax = "acedb" 120 121" The structure of the model.wrm file is sensitive to mixed tab and space 122" indentation and assumes tabs are 8 so... 123se ts=8 124