Lines Matching refs:seq
7 seq = String.new
9 def frecuency( seq,length )
10 n, table = seq.length - length + 1, Hash.new(0)
14 table[seq[i,length]] += 1
21 def sort_by_freq( seq,length )
22 n,table = frecuency( seq,length )
30 def find_seq( seq,s )
31 n,table = frecuency( seq,s.length )
41 seq << line.chomp
45 [1,2].each {|i| sort_by_freq( seq,i ) }
47 %w(ggt ggta ggtatt ggtattttaatt ggtattttaatttatagt).each{|s| find_seq( seq,s) }